ShapePipe pipelines are launched and managed via the
A list of command line arguments can be displayed using the
shapepipe environment will need to be built and activated in order to run this script (see Installation).
The options for defining a pipeline are managed via a configuration file.
Running ShapePipe with Joblib¶
By default ShapePipe is run using
Joblib to manage parallel
shapepipe_run script can run as follows
which will by default look for a file called
config.ini in the current
directory. To specify the path to a given configuration file (with any name)
you would run
shapepipe_run -c <PATH TO CONFIG FILE>